The body of 19-year-old Haominlem Chongloi, a student of St Edmunds' College, was found near the Madanrting police station Tuesday night.
Chongloi, who is a resident of Manipur, bore multiple injuries on his body.
Another body, identified as that of Montu Sen Gupta, 42, was found inside a culvert near PGT College, police said. Gupta had gone missing July 8.
'Investigation is on to find out the cause of the death,' Deputy Superintendent of Police Vivek Syiem said.